DreEX6011372 @ danRer10
Exon Skipping
Gene
ENSDARG00000030961 | ak8
Description
adenylate kinase 8 [Source:ZFIN;Acc:ZDB-GENE-050522-275]
Coordinates
chr5:29084662-29092214:+
Coord C1 exon
chr5:29084662-29084865
Coord A exon
chr5:29090505-29090636
Coord C2 exon
chr5:29092125-29092214
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTATTTACACTGCAGTGC
3' ss Score
5.15
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
ATGTATATCATGTCACCTTCATGTGGCCTGAGAGTGAAGAGGTTGCACGGCGTTTAGAAACACCCAGGACTCTTATGCCAGTTCAAGTTATGAGCCAAAAGCTGCAGAAATACCACACAGAAGCTCACGCTCTGAAGCGCACCTACCACAACTGCCTGAAGATCATCAATGCTGACCAGCCTCATGTAGATGTATTTTCACAAG
Seq A exon
TGCTGAACTTCATCTGTACTCCACGTCACTCTCCCTCACCCTACACTCCCAGAATCCTGCTGTTTGGACCACCAGGTGCAGGAAAAAGTCTGCAGGCAAAACTAATTGCTCAGAAATACGGCATCATCAACA
Seq C2 exon
TTTGTTGTGGTGAGCTTCTGAAGGCTGTGTCAGCTGATGAGAGCCATATGGGGGAGCTCATTAAACCGTACCTGGAGTCAGAACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030961-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(29.5=75.4),PF051919=ADK_lid=PD(68.0=24.6)
A:
PF0040617=ADK=PU(13.3=53.3)
C2:
PF0040617=ADK=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTTCATGTGGCCTGAG
R:
AATGAGCTCCCCCATATGGCT
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]