GgaEX0020075 @ galGal3
Exon Skipping
Gene
ENSGALG00000013404 | E1BT67_CHICK
Description
NA
Coordinates
chr17:7324055-7329005:-
Coord C1 exon
chr17:7328808-7329005
Coord A exon
chr17:7325929-7326060
Coord C2 exon
chr17:7324055-7324144
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTGTCCTCTTCTAGCTC
3' ss Score
11.9
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGGTGTACCATACGACCTTTGACTGGCCAAATGATGTGCAGATACAGCAACGTTTGGTGAAACCAGATCTGTCTGAGGAGGAGATGTCAAAACAACTGCTGGAATACCATAGGAACTTCCCCGGGGTGTTCCAGATCTACCAAAAAATTCTGAGATCAATCAATGCAGACCAGCCTTGTGTGGATGTCATATCACAAG
Seq A exon
CTCTTACCTATGTCCAAACCCAGCACCGATCAGCTGCCCCTTTTACTCCACGTATTCTCTTTTGTGGCCCCCCAGGCAGTGGGAAGAGCCTGCAGGCAGCACTAATAGCTCAGAAATACAGCGTTGTCAACA
Seq C2 exon
TTTGCTGTGGGCAACTGCTAAAGGAAGCTGTTGCAGACAAGACAAAACTTGGAGAACTCGTTAAGCCTTATATTGACAACGGATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(28.6=74.6)
A:
PF0040617=ADK=PU(20.7=53.3)
C2:
PF0040617=ADK=FE(25.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGCCAAATGATGTGCA
R:
AGGCTTAACGAGTTCTCCAAGT
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]