HsaEX6063680 @ hg19
Exon Skipping
Gene
ENSG00000165695 | C9orf98
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:26526]
Coordinates
chr9:135690025-135702441:-
Coord C1 exon
chr9:135702241-135702441
Coord A exon
chr9:135698592-135698723
Coord C2 exon
chr9:135690025-135690114
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCATATCCTCTCTTTCCAGCTC
3' ss Score
10.08
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGATTTATCACACCACCTTTGACTGGCCACCCGAATCTGAAATCCAGAACCGTCTCATGGTGCCAGAGGACATCTCAGAGCTGGAGACGGCTCAGAAACTGCTGGAGTATCATAGGAACATCGTCAGGGTCATTCCCTCCTACCCCAAAATCCTCAAAGTCATCAGTGCTGACCAGCCATGTGTGGACGTCTTCTACCAGG
Seq A exon
CTCTGACCTATGTCCAAAGCAACCATCGTACTAATGCCCCGTTCACCCCGAGGGTGCTGCTGCTCGGGCCTGTGGGCAGTGGGAAAAGTCTGCAGGCCGCCCTCCTGGCCCAGAAATACAGGCTTGTCAATG
Seq C2 exon
TCTGCTGTGGGCAACTGCTGAAAGAGGCTGTGGCAGATAGGACCACGTTTGGCGAGCTCATCCAGCCCTTCTTTGAAAAGGAGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(29.4=76.5),PF051919=ADK_lid=PD(65.2=22.1)
A:
PF0040617=ADK=PU(13.4=53.3)
C2:
PF0040617=ADK=FE(16.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACACCACCTTTGACTGGC
R:
CCAAACGTGGTCCTATCTGCC
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)