RnoEX6016176 @ rn6
Exon Skipping
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7316707-7323366:+
Coord C1 exon
chr3:7316707-7316907
Coord A exon
chr3:7320454-7320585
Coord C2 exon
chr3:7323277-7323366
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCAACTCCTCTTGTTCTAGCTC
3' ss Score
7.57
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGATCTATCACACCACCTTCGACTGGCCCCCTGAGCTTGAAATACAGAACAGGCTGATACAGCCAGAAGGCATCTCGGAGATAGACACAGCGAAGAAGCTGCTGGAATACCACAGGCACATCATCAGGATTCTTCCTTCCTACCCTAAAATCCTGAAAACTATCAGCTCAGACCAGCCATGTGTGGATGTCTTCTACCAGG
Seq A exon
CTCTGACCTACGTCCAATCTGGCCACCGATGTAATGCCCCGTTCACCCCCAAGGTGCTGCTGTGTGGGCCAATGGGCTGTGGGAAGAAACTGCAGGCTGCCCTTCTGTCCCAGAAATATGGCCTCGTGAACA
Seq C2 exon
TCAGCTGCGGGCAGCTGCTGAAGGAAGCTATGGCAGCCGAATCGAGCCTTGGGGACCTCATAGAACCATTCTTTGAAAAGAGGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761-'17-25,'17-21,18-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(29.0=75.0)
A:
PF0040617=ADK=PU(13.3=53.3)
C2:
PF0040617=ADK=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCCTGAGCTTGAAATAC
R:
TTCTATGAGGTCCCCAAGGCT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]