BtaEX0002981 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004092 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr11:102814877-102885208:-
Coord C1 exon
chr11:102885119-102885208
Coord A exon
chr11:102863673-102863814
Coord C2 exon
chr11:102814877-102814957
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTCCTTTCTCCGCAGTCC
3' ss Score
12.55
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCTGCTGTGGGCAACTGCTCAAAGAAGCCGTGGCGGACAAGTCCAAATACAGCGATTTGATCCAGCCATTTTTCGAGAAGGAGATAGCAG
Seq A exon
TCCCCGACAACATCATCATGAAGGTGCTGAAGCAGCGCCTGGACCAGCAGGACTGTGTTGAGAGAGGGTGGGTGCTGCACGGCTTCCCGCGAGACCTGGACCAGGCGCACCTGATGGACAATCTGGGCTACAAGCCCAACAG
Seq C2 exon
GGTGTTTTTCCTGAACGTGCCATTCGATTCTGTCATTGAGCGGCTGAGCCTGAGAAGAACCGACCCCATCACAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004092_MULTIEX1-4/5=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PD(52.8=90.3)
A:
PF0040617=ADK=FE(26.3=100)
C2:
PF0040617=ADK=FE(15.1=100)
Main Skipping Isoform:
ENSBTAT00000005345fB475
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAACTGCTCAAAGAAGCC
R:
CTTTCTCCTGTGATGGGGTCG
Band lengths:
163-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development