HsaEX0011792 @ hg19
Exon Skipping
Gene
ENSG00000165695 | C9orf98
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:26526]
Coordinates
chr9:135602841-135690114:-
Coord C1 exon
chr9:135690025-135690114
Coord A exon
chr9:135668021-135668162
Coord C2 exon
chr9:135602841-135602921
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCCCCTTCTCTGCAGTTC
3' ss Score
10.17
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCTGCTGTGGGCAACTGCTGAAAGAGGCTGTGGCAGATAGGACCACGTTTGGCGAGCTCATCCAGCCCTTCTTTGAAAAGGAGATGGCAG
Seq A exon
TTCCTGACAGCCTCCTCATGAAGGTGCTGAGCCAGCGCCTGGACCAGCAGGACTGCATCCAGAAAGGCTGGGTGCTACACGGCGTCCCGCGGGACCTCGACCAGGCACACCTGCTGAACCGCCTGGGCTACAATCCCAACAG
Seq C2 exon
GGTGTTTTTCCTGAATGTGCCATTTGATTCCATCATGGAGCGGCTGACTCTGAGAAGAATTGATCCAGTCACTGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695-'14-17,'14-14,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(16.8=100)
A:
PF0040617=ADK=FE(26.3=100)
C2:
PF0040617=ADK=FE(15.1=100),PF051919=ADK_lid=PU(39.1=32.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGCAACTGCTGAAAGA
R:
CTGGATCAATTCTTCTCAGAGTCAGC
Band lengths:
154-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)