DreEX0012398 @ danRer10
Exon Skipping
Gene
ENSDARG00000030961 | ak8
Description
adenylate kinase 8 [Source:ZFIN;Acc:ZDB-GENE-050522-275]
Coordinates
chr5:29092125-29110402:+
Coord C1 exon
chr5:29092125-29092214
Coord A exon
chr5:29098614-29098755
Coord C2 exon
chr5:29110322-29110402
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTTAATCCATACAGTGC
3' ss Score
5.64
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTGTTGTGGTGAGCTTCTGAAGGCTGTGTCAGCTGATGAGAGCCATATGGGGGAGCTCATTAAACCGTACCTGGAGTCAGAACAGCAAG
Seq A exon
TGCCGTCCAGTATAGTTCTGCGGGTCCTTACAGAGAGACTGAGCAGAATGGATTGCACCGCACGGGGCTGGGTGCTTCATGGCTTTCCTCGAGATGTTGAAGAGGCAGAACTTCTCCACAAGTCTAATTTCACACCAAACAG
Seq C2 exon
GGTTTTCTTCTTGGAGATTACTGATGACATCGCTATCGAAAGGCTAGCACTTAGGGCTGTGGATCCTGTGACAGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030961_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(16.7=100)
A:
PF0040617=ADK=FE(26.1=100)
C2:
PF0040617=ADK=FE(15.0=100)
Main Skipping Isoform:
ENSDART00000043096fB1115
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTGGTGAGCTTCTGAAGG
R:
CTGTCACAGGATCCACAGCC
Band lengths:
162-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]