HsaEX0011792 @ hg38
Exon Skipping
Gene
ENSG00000165695 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr9:132727454-132814727:-
Coord C1 exon
chr9:132814638-132814727
Coord A exon
chr9:132792634-132792775
Coord C2 exon
chr9:132727454-132727534
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCCCCTTCTCTGCAGTTC
3' ss Score
10.17
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCTGCTGTGGGCAACTGCTGAAAGAGGCTGTGGCAGATAGGACCACGTTTGGCGAGCTCATCCAGCCCTTCTTTGAAAAGGAGATGGCAG
Seq A exon
TTCCTGACAGCCTCCTCATGAAGGTGCTGAGCCAGCGCCTGGACCAGCAGGACTGCATCCAGAAAGGCTGGGTGCTACACGGCGTCCCGCGGGACCTCGACCAGGCACACCTGCTGAACCGCCTGGGCTACAATCCCAACAG
Seq C2 exon
GGTGTTTTTCCTGAATGTGCCATTTGATTCCATCATGGAGCGGCTGACTCTGAGAAGAATTGATCCAGTCACTGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695-'21-31,'21-26,23-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(16.8=100)
A:
PF0040617=ADK=FE(26.3=100)
C2:
PF0040617=ADK=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGCAACTGCTGAAAGA
R:
CTGGATCAATTCTTCTCAGAGTCAGC
Band lengths:
154-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development