GgaEX7009798 @ galGal4
Exon Skipping
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6676737-6689879:-
Coord C1 exon
chr17:6689790-6689879
Coord A exon
chr17:6676817-6676958
Coord C2 exon
chr17:6676737-6676794
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTAATCCTTTGCAGTCC
3' ss Score
8.6
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTTGCTGTGGGCAACTGCTAAAGGAAGCTGTTGCAGACAAGACAAAACTTGGAGAACTCGTTAAGCCTTATATTGACAACGGATACCCAG
Seq A exon
TCCCAGACAACACTGTTATGAAGATCCTGGAGAAACGCCTAAATGCACCAGACTGCATGACCAGGGGCTGGGTGCTTCGTGGCTTCCCAAGGGACATAGAGCAGGCAGAGAGGCTGCAAAAAGCATGTATTATTCCAAACAG
Seq C2 exon
TACATACATTGCAAATAAGCCTGTGGAGAGATACAGATCTTTACTGACATTATATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'15-17,'15-16,20-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(28.0=100)
A:
PF0040617=ADK=FE(43.9=100)
C2:
PF0040617=ADK=PD(4.7=25.0)
Main Skipping Isoform:
ENSGALT00000021862fB4863
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGCAACTGCTAAAGGA
R:
GTAAAGATCTGTATCTCTCCACAGGC
Band lengths:
130-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]