MmuEX6100027 @ mm10
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28742660-28809740:+
Coord C1 exon
chr2:28742660-28742749
Coord A exon
chr2:28759942-28760083
Coord C2 exon
chr2:28809660-28809740
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTATCTGTCTCCCTCTGCAGTTC
3' ss Score
11.82
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCAGCTGCGGGCAGCTGCTGAAGGAGGCTGTGGCAGCCAAGTCAAGCTTCGGGGAGCTCATCCAGCCATTCTTTGAAAAGAGGATGACAG
Seq A exon
TTCCAGACAGTATCATCACCAAAGTTCTGGCTGATCGAATGGAGCAACAAGATTGCATCCAGAAAGGGTGGGTGCTGCACGGCTTCCCAAGAGACCTGGACCAGGCCCGGATGCTGAACTCCATGGGCTACAATCCCAACAG
Seq C2 exon
GGTCTTCTTCCTGAGTGTGCCACTGGATTCCATTCTGGAGCGGCTGACGCTGAGAAGGACAGACCCTGTCACAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807-'21-28,'21-22,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(16.7=100)
A:
PF0040617=ADK=FE(26.1=100)
C2:
PF0040617=ADK=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGAAGGAGGCTGTG
R:
ACAGGGTCTGTCCTTCTCAGC
Band lengths:
146-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types