RnoEX0008270 @ rn6
Exon Skipping
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7323277-7390830:+
Coord C1 exon
chr3:7323277-7323366
Coord A exon
chr3:7341623-7341764
Coord C2 exon
chr3:7390750-7390830
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTTTTCCTCTGCAGTTC
3' ss Score
11.1
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCAGCTGCGGGCAGCTGCTGAAGGAAGCTATGGCAGCCGAATCGAGCCTTGGGGACCTCATAGAACCATTCTTTGAAAAGAGGATGACAG
Seq A exon
TTCCAGACAGTATCATCACCAGAGTTCTGACTGAGCGTCTGAAGCAACAAGATTGCATCCAGAAAGGGTGGGTGCTGCACGGCTTCCCAAGAGACCTGGACCAGGCCCGGCTGCTGAACTCTATGGGCTACAGTCCCAACAG
Seq C2 exon
GGTGTTCTTCCTGAATGTGCCGTTGGATTCCATCCTGGAGCGGCTCACACTGAGAAGGACAGACCCTGTCACAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(16.7=100)
A:
PF0040617=ADK=FE(26.1=100)
C2:
PF0040617=ADK=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGAAGGAAGCTATGGC
R:
ACAGGGTCTGTCCTTCTCAGT
Band lengths:
146-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]