BtaEX0003414 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13413089-13417706:-
Coord C1 exon
chr6:13417584-13417706
Coord A exon
chr6:13415014-13415046
Coord C2 exon
chr6:13413089-13413110
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGGCGTCTTGGGGTGGCCAGGAA
3' ss Score
3.11
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTACGTGATACGACTCAGGAACCTTGCGGACGACTATCATTTATGAAAGAGCCAAAATCTACAAGAGGCCTGGTGCACCAAGCTATTTGCAACTTAAACATCACCCTGCCAATTTATACGAAG
Seq A exon
GAATCAGAGTCAGATCAAGAACAGGAGGAAGAG
Seq C2 exon
ATCGATATGACATCAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.595 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000003097fB554
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development