GgaEX6035123 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58312426-58316069:-
Coord C1 exon
chr4:58315947-58316069
Coord A exon
chr4:58314505-58314537
Coord C2 exon
chr4:58312426-58312447
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGGCATTTTGGAACCGAAAGGAA
3' ss Score
-0.98
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGCGAGATACCACTCAAGAACCCTGCGGACGATTATCATTCATGAAGGAGCCAAAATCAACAAGAGGTCTTGTTCATCAAGCCATATGTAATTTAAACATCACATTACCTGTTTACACAAAG
Seq A exon
GAATCGGAATCAGATCAAGAACAAGAAGAAGAG
Seq C2 exon
GTTGATATGACTTCAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'55-59,'55-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.950 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]