DreEX0013083 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57624988-57626035:-
Coord C1 exon
chr7:57625913-57626035
Coord A exon
chr7:57625441-57625473
Coord C2 exon
chr7:57624988-57625009
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTTGCTCCTCTAAGGAA
3' ss Score
6.87
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
ATACGAGACAACACTCAAGAGCCTTGTGGACGCTTGTCCTTCACAAAAGAGCCGAGATCTTTTAGGACTTTGAGTCATGGTGCAGTATGCAATCTAAACATTTCCCTGCCAGCTTACTCTAAG
Seq A exon
GAATCAGATTCAGATCAAGAACCTGATGAGGAG
Seq C2 exon
ACAAGCCGAACACTTGGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'58-54,'58-53,59-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCTTGTGGACGCTTG
R:
TTTCCCAAGTGTTCGGCTTGT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]