HsaEX0004134 @ hg19
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:493]
Coordinates
chr4:114267056-114271405:+
Coord C1 exon
chr4:114267056-114267178
Coord A exon
chr4:114269432-114269464
Coord C2 exon
chr4:114271384-114271405
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGGCATCTTGGGGCGGAAAGGAA
3' ss Score
-1.96
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTACGCGATACGACTCAGGAACCTTGCGGACGACTATCATTTATGAAGGAGCCAAAATCCACGAGAGGCCTGGTGCATCAAGCTATTTGCAACTTAAACATCACTTTGCCGATTTATACAAAG
Seq A exon
GAATCAGAGTCAGATCAAGAACAGGAGGAAGAG
Seq C2 exon
ATCGATATGACATCAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.117 A=1.000 C2=0.969
Domain overlap (PFAM):
C1:
PF103904=ELL=FE(32.8=100)
A:
PF103904=ELL=FE(8.8=100)
C2:
PF103904=ELL=FE(5.6=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)