HsaEX0004134 @ hg38
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113345900-113350249:+
Coord C1 exon
chr4:113345900-113346022
Coord A exon
chr4:113348276-113348308
Coord C2 exon
chr4:113350228-113350249
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGGCATCTTGGGGCGGAAAGGAA
3' ss Score
-1.96
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTACGCGATACGACTCAGGAACCTTGCGGACGACTATCATTTATGAAGGAGCCAAAATCCACGAGAGGCCTGGTGCATCAAGCTATTTGCAACTTAAACATCACTTTGCCGATTTATACAAAG
Seq A exon
GAATCAGAGTCAGATCAAGAACAGGAGGAAGAG
Seq C2 exon
ATCGATATGACATCAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-'80-95,'80-94,81-95
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.123 A=1.000 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development