BtaEX0003417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:16003199-16025516:-
Coord C1 exon
chr28:16025418-16025516
Coord A exon
chr28:16009677-16009775
Coord C2 exon
chr28:16003199-16003396
Length
99 bp
Sequences
Splice sites
3' ss Seq
AACGTTGCCTTTTTTGATAGGAC
3' ss Score
7.57
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AATGACATCACTCCTCTACATGTTGCATCAAAAAGAGGAAATGCCAACATGGTAAAACTATTGCTTGATCGAGGAGCTAAAATTGATGCCAAAACAAGG
Seq A exon
GACGGTCTGACGCCGCTGCACTGCGGAGCGAGAAGTGGCCATGAACAGGTGGTGGAGATGCTGCTCGATCGAGCTGCCCCTATTCTCTCCAAAACCAAG
Seq C2 exon
AATGGATTGTCTCCTCTTCACATGGCTACGCAGGGGGATCATTTAAACTGCGTCCAGCTTCTCCTGCAGCATAATGTGCCTGTGGATGACGTCACCAACGACTACCTGACCGCCCTGCACGTGGCTGCCCACTGCGGCCATTACAAAGTCGCCAAGGTTCTCTTGGACAAGAAAGCTAATCCCAACGCCAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(30.7=93.9)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PU(64.5=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGGAGCTAAAATTGATGCCA
R:
ACTTTGTAATGGCCGCAGTGG
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development