MmuEX6048926 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69850106-69871199:+
Coord C1 exon
chr10:69850106-69850204
Coord A exon
chr10:69867385-69867483
Coord C2 exon
chr10:69871002-69871199
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTATCGCCTTTGTTCCACAGGAC
3' ss Score
9.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AATGACATCACTCCCTTACACGTTGCCTCGAAGCGAGGAAATGCAAATATGGTGAAGCTATTGCTGGACCGGGGTGCGAAGATCGATGCCAAGACCAGG
Seq A exon
GACGGTCTGACTCCGTTGCACTGTGGGGCGAGAAGTGGCCATGAGCAGGTGGTAGAGATGTTGCTTGACAGATCCGCCCCCATCCTTTCAAAAACCAAG
Seq C2 exon
AATGGATTGTCGCCACTGCACATGGCCACACAAGGAGACCATTTAAACTGCGTCCAACTCCTCCTCCAGCACAACGTGCCCGTGGACGACGTCACCAACGACTACCTGACTGCCCTCCATGTGGCTGCCCACTGCGGCCATTACAAAGTTGCCAAGGTTCTTTTGGATAAGAAAGCTAGCCCCAATGCCAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'29-46,'29-44,39-46=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(0.1=0.0),PF136371=Ank_4=PU(56.6=90.9)
A:
PF127962=Ank_2=PD(36.0=93.9)
C2:
PF127962=Ank_2=PU(64.5=90.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAAGATCGATGCCAAGAC
R:
GCAACTTTGTAATGGCCGCAG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types