GgaEX1065956 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10057496-10068711:+
Coord C1 exon
chr6:10057496-10057594
Coord A exon
chr6:10064685-10064783
Coord C2 exon
chr6:10068514-10068711
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATAATGCTTGTGTCCCCCAGGAT
3' ss Score
8.23
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AATGATATCACACCATTACATGTTGCTTCGAAGAGGGGAAATGCAAATATGGTCAAACTCCTACTTGATCGTGGAGCTAAAATTGATGCCAAAACAAGG
Seq A exon
GATGGGTTGACCCCCCTCCACTGTGGAGCAAGAAGCGGCCATGAACAAGTCGTAGAAATGCTGCTGGATCGTGGTGCTCCTATTCTTTCCAAAACAAAG
Seq C2 exon
AATGGTTTGTCTCCACTGCACATGGCAACACAAGGAGATCATCTAAACTGTGTTCAGCTCCTGATTCAGCACAACGTGCCTGTGGATGATGTCACTAATGACTATTTGACTGCGCTGCATGTTGCCGCCCACTGTGGCCACTACAAAGTTGCCAAGGTTCTCTTGGACAAGAAAGCTAATCCTAATGCCAAAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.063 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=PU(64.5=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAAGAGGGGAAATGCA
R:
GACATCATCCACAGGCACGTT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]