HsaEX6088513 @ hg19
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61967794-61994544:-
Coord C1 exon
chr10:61994446-61994544
Coord A exon
chr10:61973170-61973268
Coord C2 exon
chr10:61967794-61967991
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCCTTTGTTCAACAGGAT
3' ss Score
10.41
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AATGACATCACTCCTTTACATGTTGCATCAAAAAGAGGAAATGCAAATATGGTAAAACTATTGCTCGATCGAGGAGCTAAAATCGATGCCAAAACCAGG
Seq A exon
GATGGTCTGACACCACTGCACTGTGGAGCAAGGAGTGGCCACGAGCAGGTGGTAGAAATGTTGCTTGATCGAGCTGCCCCCATTCTTTCAAAAACCAAG
Seq C2 exon
AATGGATTATCTCCATTGCACATGGCCACACAAGGGGATCATTTAAACTGCGTCCAGCTTCTCCTCCAGCATAATGTACCCGTGGATGATGTCACCAATGACTACCTGACTGCCCTACACGTGGCTGCCCACTGTGGCCATTACAAAGTTGCCAAGGTTCTCTTGGATAAGAAAGCTAACCCCAATGCCAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(0.1=0.0),PF136371=Ank_4=PU(56.6=90.9)
A:
PF127962=Ank_2=PD(33.7=93.9)
C2:
PF127962=Ank_2=PU(64.5=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGCTAAAATCGATGCCA
R:
ACTTTGTAATGGCCACAGTGGG
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)