RnoEX0009361 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20302989-20321439:+
Coord C1 exon
chr20:20302989-20303087
Coord A exon
chr20:20318109-20318207
Coord C2 exon
chr20:20321242-20321439
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTATCGCCTTTGTTCCACAGGAC
3' ss Score
9.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AATGACATCACTCCTTTGCATGTTGCCTCGAAACGGGGAAACGCAAATATGGTAAAGCTGTTGCTCGACCGGGGTGCGAAGATCGACGCCAAGACCAGG
Seq A exon
GACGGTCTGACCCCGCTGCACTGCGGGGCGAGAAGTGGCCACGAGCAGGTGGTAGAGATGTTGCTGGACAGAGCCGCCCCCATCCTTTCGAAAACCAAG
Seq C2 exon
AATGGACTGTCCCCACTGCACATGGCCACACAAGGAGACCATTTAAACTGCGTCCAACTCCTCCTCCAGCACAACGTGCCCGTGGATGACGTCACCAACGACTACCTGACCGCCCTCCACGTGGCGGCCCACTGCGGCCATTACAAAGTTGCCAAGGTTCTTTTGGATAAGAAAGCTAACCCCAATGCCAAAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'14-21,'14-20,15-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(0.1=0.0),PF136371=Ank_4=PU(56.6=90.9)
A:
PF136371=Ank_4=PD(39.6=63.6)
C2:
PF127962=Ank_2=PU(64.5=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATCGACGCCAAGACCAG
R:
GCAACTTTGTAATGGCCGCAG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]