DreEX0013129 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7738657-7747180:-
Coord C1 exon
chr12:7747082-7747180
Coord A exon
chr12:7743750-7743848
Coord C2 exon
chr12:7738657-7738854
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTCTAATCTCCAGGAT
3' ss Score
9.09
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
AATGACATCACGCCTCTCCATGTGGCATCGAAAAGAGGAAACGCCAACATGGTCAGGCTTCTGCTGGAGAGAGGAGCCCGAATCGACGCCAGAACCAAG
Seq A exon
GATGGCCTAACACCTTTACACTGTGGAGCGAGGAGCGGTCATGAGCAAGTGGTTGAGATGTTGCTAGATCGCGGAGCACCCATCCTTTCAAAAACAAAG
Seq C2 exon
AATGGCTTGTCGCCGCTGCACATGGCCACGCAGGGAGATCATCTGAACTGCGTCCAGCTCTTGATTCATCATGAGGTGCCTGTGGACGACGTCACCAACGATTACCTGACAGCCTTGCACGTCGCTGCACATTGCGGACACTACAAAGTCGCCAAGGTCCTAGTGGACAAGAGGGCCAATCCGAATGCCAAAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'16-13,'16-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.084 C2=0.015
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(30.7=93.9)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PU(64.5=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCACGCCTCTCCATGTG
R:
GTCCACAGGCACCTCATGATG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]