GgaEX1065956 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8396586-8409813:+
Coord C1 exon
chr6:8396586-8396684
Coord A exon
chr6:8403775-8403873
Coord C2 exon
chr6:8409715-8409813
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATAATGCTTGTGTCCCCCAGGAT
3' ss Score
8.23
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AATGATATCACACCATTACATGTTGCTTCGAAGAGGGGAAATGCAAATATGGTCAAACTCCTACTTGATCGTGGAGCTAAAATTGATGCCAAAACAAGG
Seq A exon
GATGGGTTGACCCCCCTCCACTGTGGAGCAAGAAGCGGCCATGAACAAGTCGTAGAAATGCTGCTGGATCGTGGTGCTCCTATTCTTTCCAAAACAAAG
Seq C2 exon
AATGGTTTCACACCTCTGCACATTGCCTGCAAGAAGAACAGGATAAAAGTGATGGAACTTCTTCTGAAGCATGGTGCATCAATCCAAGCTGTGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_MULTIEX2-6/7=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF127962=Ank_2=PD(0.1=0.0),PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAAGAGGGGAAATGCA
R:
ACAGCTTGGATTGATGCACCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]