BtaEX0003422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:16054516-16056695:-
Coord C1 exon
chr28:16056510-16056695
Coord A exon
chr28:16055793-16055816
Coord C2 exon
chr28:16054516-16054614
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTCCAATTGTGTTAACCTAGATG
3' ss Score
4.32
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GATGGCTTCACACCATTGGCAGTAGCTTTGCAACAAGGTCACGATCAAGTAGTGTCACTTCTGCTAGAAAATGACACAAAAGGAAAAGTGCGTCTTCCAGCTCTTCACATCGCTGCCCGAAAAGATGACACGAAAGCCGCTGCCCTGCTGCTGCAGAATGACAACAATGCGGATGTGGAGTCAAAG
Seq A exon
ATGGTGGTGAATAGAACAACAGAG
Seq C2 exon
AGTGGCTTCACTCCGCTCCACATAGCTGCTCACTATGGAAACATCAACGTAGCCACATTGCTGTTAAACCGAGCAGCTGCCGTGGACTTCACTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=50.0),PF127962=Ank_2=PU(26.7=43.5)
A:
PF127962=Ank_2=FE(6.9=100)
C2:
PF127962=Ank_2=FE(31.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCTCTTCACATCGCTG
R:
CTATGTGGAGCGGAGTGAAGC
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development