HsaEX1003668 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60261859-60264020:-
Coord C1 exon
chr10:60263835-60264020
Coord A exon
chr10:60263126-60263149
Coord C2 exon
chr10:60261859-60261957
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTCCAAATGTGTTAACCTAGATG
3' ss Score
4
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GATGGCTTCACACCATTGGCAGTGGCTTTGCAACAAGGTCACGACCAAGTCGTTTCGCTCCTGCTAGAGAATGACACCAAAGGAAAAGTGCGTCTCCCAGCTCTTCATATCGCGGCCCGAAAAGACGACACGAAAGCCGCCGCCCTGCTGCTGCAGAATGACAACAATGCAGATGTGGAATCAAAG
Seq A exon
ATGGTGGTGAATAGAACAACAGAG
Seq C2 exon
AGTGGCTTCACTCCGCTCCACATAGCTGCTCACTATGGAAATATCAATGTAGCCACGTTGCTGTTAAACCGAGCGGCTGCTGTGGATTTCACCGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150_MULTIEX3-3/14=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=50.0),PF127962=Ank_2=PU(26.7=43.5)
A:
PF127962=Ank_2=FE(6.9=100)
C2:
PF127962=Ank_2=FE(43.2=100),PF127962=Ank_2=PU(9.6=21.2)
Main Inclusion Isoform:
ENST00000280772fB9309
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGCAGAATGACAACA
R:
GCTCGGTTTAACAGCAACGTG
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains