MmuEX0004909 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69822208-69823325:+
Coord C1 exon
chr10:69822208-69822393
Coord A exon
chr10:69823078-69823101
Coord C2 exon
chr10:69823225-69823325
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTCCCAATGTGTTAACCTAGATG
3' ss Score
4.99
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GACGGCTTCACGCCATTGGCCGTGGCTCTGCAACAAGGTCATGACCAAGTCGTGTCCCTCCTGCTCGAGAACGACACGAAGGGAAAAGTGCGCCTCCCAGCCCTCCACATCGCAGCCCGGAAAGACGACACCAAGGCAGCAGCTCTGCTCCTGCAGAATGACACAAACGCGGACGTGGAGTCAAAG
Seq A exon
ATGGTGGTGAATAGAGCAACTGAG
Seq C2 exon
GTTTGCTGCCTCATCCTGCCCATCCCCGCCCCTCCTTTTTTGCCTTGCCTTCTGTAGGCTAGAATCCTGCTTCACCCATCCCCTGGCCCTGAAGGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'29-39,'29-38,31-39
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.018 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=50.0),PF127962=Ank_2=PU(53.5=61.3)
A:
PF127962=Ank_2=FE(6.9=100)
C2:
NO
Main Inclusion Isoform:
ENSMUST00000182992fB5784
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAATGACACAAACGCG
R:
GGGATGGGTGAAGCAGGATTC
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types