DreEX0013149 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7751480-7758981:-
Coord C1 exon
chr12:7758796-7758981
Coord A exon
chr12:7756234-7756257
Coord C2 exon
chr12:7751480-7751578
Length
24 bp
Sequences
Splice sites
3' ss Seq
CGCTCTGGTGGTCCCTCTAGATG
3' ss Score
8.77
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GATGGTTTTACTCCGCTGGCCGTAGCTCTCCAGCAGGGTCATGATCAGGTGGTGTCTCTGCTCCTGGAGAACGACACCAAGGGGAAGGTGCGATTACCTGCCCTGCACATCGCTGCCCGTAAGGATGACACAAAAGCAGCGGCGCTACTCCTGCAGAACGACCACAACGCAGATATTGAATCCAAG
Seq A exon
ATGATGGTGAATAGAACGACAGAG
Seq C2 exon
AGCGGCTTCACCCCTCTCCATATAGCGGCTCATTACGGGAACATCAACGTTGCGACCCTGCTGCTGAACCGCGGGGCTGCCGTTGACTTCAAGGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582_MULTIEX2-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=50.0),PF127962=Ank_2=PU(26.7=43.5)
A:
PF127962=Ank_2=FE(6.9=100)
C2:
PF127962=Ank_2=FE(31.7=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTACCTGCCCTGCACATCG
R:
ATATGGAGAGGGGTGAAGCCG
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]