RnoEX0009382 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20273904-20276110:+
Coord C1 exon
chr20:20273904-20274089
Coord A exon
chr20:20274773-20274796
Coord C2 exon
chr20:20276012-20276110
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTCCCAATGTGTTAACCTAGATG
3' ss Score
4.99
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GATGGCTTCACGCCATTGGCCGTGGCTCTTCAACAAGGTCACGACCAAGTCGTATCCCTCCTGCTCGAGAACGACACGAAGGGAAAAGTGCGCCTCCCAGCCCTCCACATCGCGGCCCGGAAAGATGACACCAAAGCGGCAGCTCTGCTCCTACAGAACGACACCAATGCAGACATAGAGTCAAAG
Seq A exon
ATGGTGGTGAATAGAGCAACTGAG
Seq C2 exon
AGTGGCTTCACCCCACTCCACATAGCTGCCCACTACGGGAATATCAATGTGGCCACGTTGCTGTTAAACCGAGCGGCTGCCGTGGACTTCACCGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=50.0),PF136371=Ank_4=PU(50.0=50.0)
A:
PF136371=Ank_4=FE(11.3=100)
C2:
PF136371=Ank_4=PD(33.9=63.6)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTACAGAACGACACCA
R:
TAACAGCAACGTGGCCACATT
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]