GgaEX0004069 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10043911-10045958:+
Coord C1 exon
chr6:10043911-10044096
Coord A exon
chr6:10044645-10044668
Coord C2 exon
chr6:10045860-10045958
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTCCAAATGTGTTAACCTAGATG
3' ss Score
4
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GACGGTTTCACACCTTTGGCAGTAGCTTTACAGCAAGGTCATGACCAGGTGGTTTCACTGTTGCTTGAAAATGATACAAAAGGAAAAGTCCGTCTTCCTGCTCTTCACATCGCTGCTCGGAAGGATGATACGAAGGCAGCGGCTCTGCTCCTGCAGAATGACCACAATGCTGATGTTGAGTCAAAG
Seq A exon
ATGATGGTGAATAGAACAACAGAG
Seq C2 exon
AGTGGGTTCACACCCCTTCACATAGCTGCTCACTATGGAAATATCAATGTAGCTACATTGCTGTTAAATCGAGGAGCTGCTGTGGACTTCACTGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=50.0),PF127962=Ank_2=PU(29.0=43.5)
A:
PF127962=Ank_2=FE(6.9=100)
C2:
PF127962=Ank_2=PU(26.1=72.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGGAAGGATGATACG
R:
TGAGCAGCTATGTGAAGGGGT
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]