BtaEX0004465 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74929359-74930803:-
Coord C1 exon
chr17:74930718-74930803
Coord A exon
chr17:74930297-74930416
Coord C2 exon
chr17:74929359-74929994
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCGCTGCCCGCCCGCTGCAGCCC
3' ss Score
6.58
5' ss Seq
CCGGTACGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ACGGCTACTCCACCATGGACAGGAGGGAGCGTAGGCCTCGAGGCAGTGACCCAGCGGGGGAGACCTCTGAGAAGGAGCCGTTGAAA
Seq A exon
CCCGACCCCAGCAGGAAGGCTCCTCCGCCCGGGCCCAGCAGGCCTGCGGTCAGGCTGGTGGACGCTGTGGGGGACGCCAGGCCTCAGCCTGTCGACTCTTGGGTCTAGCTTGCATGCCCG
Seq C2 exon
GGCCTGGGCCTGGCCGTTTGCTCTTAGGGTCTGACCCCTGAAGACACCGCGGGAAGGGGCGCCTGGACGCCCGTGCAGAACCCGCTGCGGAGCTGGGAGCCCTCTGGCGGCGGGCTGGGCGGCGCCTCCCCCTCCAGCCCTGGCTCCCCACTCCTAACTCCCGGGCGAGTTAGCGTCCTGACATGGTGCTGTGTGCAGCGTGCGCCTGGGAAACCCAGGCCAGGGTGCCCGGCGTTGCTCTGGGGCCAGCGGGGACCCCGCGGAGTGCGGACGGGTGAGGAGGGGGCTCAAGGGCAGGGAGTCTGGCCCAGAGGCTGCAGGGGCTTCCTTGGGCCCTGAGCAGGGGCGGCGCTGGGGGACAGCCCCCGCAGAGACCCTGAAGGCAGAGAGCGGGGGCTAGCTGTGCGTGCCCTGCCCACTGCCCGCCGCGCCGGGAGCCCCTCCCTGGGCACTGTGGCCCTCGAGTGGCACCTCTGGGTCTGGCCTTTGGCAGCAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTCCACCATGGACAGGA
R:
GAGTTAGGAGTGGGGAGCCAG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development