MmuEX0006306 @ mm9
Exon Skipping
Gene
ENSMUSG00000000325 | Arvcf
Description
armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MGI Symbol;Acc:MGI:109620]
Coordinates
chr16:18404553-18407169:+
Coord C1 exon
chr16:18404553-18404638
Coord A exon
chr16:18405195-18405314
Coord C2 exon
chr16:18405700-18407169
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCACCCACCATGCACTGCAGCCC
3' ss Score
3.98
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
ATGGTTACGCCACAGTTGACCGGAGGGAGAGGAGGACACTGGGCAGTGACTCCACAGGGGACACCTCTGAGAAAGAACTATTGAGA
Seq A exon
CCCGATCCTGGCAGGAAGGCCCCTCCGCCTGGGCCCAGCAGGCCCTCGGTCAGGCTGGTGGACGCCGTGGGGGACACTAAGCCTCAGCCTGTTGACTCCTGGGTCTAGCTTGCATGCCTG
Seq C2 exon
GGCCCTGGCCCAGCTGTTTGTTCTTAGGGATCGCATCGAGGTAGCTGGAAGAGGGCCAGAGGGCCCGCCATCTTGAGCAGAACCAGTCTTGGAGCCAGGAGCCCCACCCTGCTGTGGCAGGGTGGCCAAGCCTCTTGTCCTACCTTACCCTACCCTCTTCTCTACTCTTCTGCTCTAACTCTCCAGGTCTGAGTTAGCTGTTTACTGACATGGTGCTGTGTGGTAGGAGAGGAGGCTGGGGGGAGGTCCCCATGCACAGCCACAGAGGAGCAAATACAAGCCTGGATTGGAGGTCCTGGAGCAGGCAATGGGACAAGTAGGGGGCCTTGGAAAAGAACTTGGGCTCCCAAGGGTGGCTGGAGTACTACACTGCATGTAGGCTGACCACAGGGAGGGCTGCTCTAAAAGAGTCCAGACAGGGAAGTTTAGGAGGCAGCCAGATTGGGGGTAGTGGCAAGCTGTGCTTGTCACCAGCACCCCCATCCTTGGATTCCTGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000325-'30-32,'30-31,32-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=1.000 C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACACCTCTGAGAAAGAAC
R:
CCTACCACACAGCACCATGTC
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: