GgaEX0002484 @ galGal3
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1067017-1071705:-
Coord C1 exon
chr15:1071614-1071705
Coord A exon
chr15:1068982-1069095
Coord C2 exon
chr15:1067017-1067585
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCCTCACCCTGTGCTGCAGAAT
3' ss Score
6.67
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATGGATACTCTACCATCGATCACCGGGACAAGGAGCGCAAATACAAGACCAGCGATAACACAGGGGATGCCTCAGAGAAAGAACCCTTAAAA
Seq A exon
AATGACACAAATAGGAAAAACATTAACAGGAGTAACAGGGCTTCGGTGAATCTGGTGGATGCTCGTGACATTAAACCCCAGCCTGTTGACTCCTGGGTCTAATTTGCATGCATG
Seq C2 exon
GGCTAGAGTCCAACCACATTTTTTTTTAATTGAGGGGGAGAAAAAAGCATTGAATTGACACAGAGGATTTCATCAGTCACCACTGCCATTTCGATCTGGAGGGCGCTGCATCACTGACAAGGCTGCGGATTCTAAGAGAATGCAGGGAGAAAACACAACTGACTGCCATTGCCAACCCAGAGCACCATGCCTTACAGCGAGACAGTTTGCTTTTTAAATGAGTTACATTCCCAGCAGACATAGCCGCCTCCTGCTCCCTCCCACTCCTGCAAGAATAAAGCAAGCAAGAAAAGAGAATCCAAGTTCCATCTGGCTGCTGCATTCTTAGGTGACTTACATGTGGAAGGTGCCAAGAATGAGAAGCGAAGGTCATGCAGCAGCAAAGAGGACAGCTTCATAAGTGAACTGCAGAATATTTGAAATGATACCTTAGGTGTAGTCATGAAGATATTAGCACTTTTATGGTTTGGGTCCCATTGTTTTCTTTTTGTTTGGGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040-'24-24,'24-23,25-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCGATCACCGGGACAA
R:
TTGGCAATGGCAGTCAGTTGT
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]