RnoEX0011995 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86736142-86737882:-
Coord C1 exon
chr11:86737797-86737882
Coord A exon
chr11:86737133-86737252
Coord C2 exon
chr11:86736142-86736868
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCACCTACCATGCACTGCAGCCG
3' ss Score
4.61
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
ATGGCTACAGCACAGTTGACCGGAGGGAGAGGAGGACACTGGGCAGCGACTCCATAGGCGACTCCTCTGAGAAGGAACTACTGAAA
Seq A exon
CCGGACCTTGGCAGGAAGGCCCCTCCGCCTGGGCCCAGCAGGCCCTCGGTCAGGCTGGTGGACGCCGTGGGTGACGCTAAGCCTCAGCCTGTTGACTCCTGGGTCTAGCTTGCATGCCTG
Seq C2 exon
GGCCCTGGCCCAGCTGTTTGTTCTTCGGATCACATGGAGGTAATTGGAAGAGGGCCGTCTGGAACAGACCCAGTCTTGGGGCCAGGAGCCCCACCCTTCTGTGTTGGGTTGGCCAAGCCTCTTGTCTACCTTGCCCTGCCCTCCTCTCTACTCTCCTGATCTAACTCTCCAGGTCCGAGTTAGCTATTTACTGACATGGTGCTGTGTGGTAGGAGAGGAGGTTGGGGGGAGGTCCCCTGCACAGCCACAGAGGAGCAAATACCAGCCTGGAGTGGAGGCCTTGGAGCAGGCAAAGGGACAAGTAGGGGGTCTTGGAAAAGAACTTGGGCTCCCAAGGGTGGCTGGAGGACTACCCTGCATGCCGGCTGGCCACAGTGAGGGCTGCTCCAAGAGTCCAGACAGGGAAGTTTAGGAGGCGGCTGGTTTGGGGGTGGGAGCAAGCTGTGCTTGTCCCCGGCGCCCCCGTCCTTGGATTCCCGGAACACCTTCCATCTGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.577
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000044635fB1511
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGACTCCTCTGAGAAGGAA
R:
CCTACCACACAGCACCATGTC
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]