GgaEX0002484 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1049119-1054884:-
Coord C1 exon
chr15:1054793-1054884
Coord A exon
chr15:1052161-1052274
Coord C2 exon
chr15:1049119-1050764
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCCTCACCCTGTGCTGCAGAAT
3' ss Score
6.67
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATGGATACTCTACCATCGATCACCGGGACAAGGAGCGCAAATACAAGACCAGCGATAACACAGGGGATGCCTCAGAGAAAGAACCCTTAAAA
Seq A exon
AATGACACAAATAGGAAAAACATTAACAGGAGTAACAGGGCTTCGGTGAATCTGGTGGATGCTCGTGACATTAAACCCCAGCCTGTTGACTCCTGGGTCTAATTTGCATGCATG
Seq C2 exon
GGCTAGAGTCCAACCACATTTTTTTTTAATTGAGGGGGAGAAAAAAGCATTGAATTGACACAGAGGATTTCATCAGTCACCACTGCCATTTCGATCTGGAGGGCGCTGCATCACTGACAAGGCTGCGGATTCTAAGAGAATGCAGGGAGAAAACACAACTGACTGCCATTGCCAACCCAGAGCACCATGCCTTACAGCGAGACAGTTTGCTTTTTAAATGAGTTACATTCCCAGCAGACATAGCCGCCTCCTGCTCCCTCCCACTCCTGCAAGAATAAAGCAAGCAAGAAAAGAGAATCCAAGTTCCATCTGGCTGCTGCATTCTTAGGTGACTTACATGTGGAAGGTGCCAAGAATGAGAAGCGAAGGTCATGCAGCAGCAAAGAGGACAGCTTCATAAGTGAACTGCAGAATATTTGAAATGATACCTTAGGTGTAGTCATGAAGATATTAGCACTTTTATGGTTTGGGTCCCATTGTTTTCTTTTTGTTTGGGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCGATCACCGGGACAA
R:
TTGGCAATGGCAGTCAGTTGT
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]