BtaEX0004792 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20694698-20697006:-
Coord C1 exon
chr11:20696879-20697006
Coord A exon
chr11:20695687-20695743
Coord C2 exon
chr11:20694698-20694769
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGAGTCTTCTGTATTTTTAGGCT
3' ss Score
8.05
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATATTGATGAAGAGTTTAAACGAGAGCTTCGAAATCTGGTTCCATTGCTCCTTGCCCCAGAAAATTTGGTAGAAAAAGAGATAAGTGGATCTAAAGTCACTTGTAGAGATCTTGTAGAATACTTTAAG
Seq A exon
GCTTACATTAAAATTTATCAAGGAGAGGAACTTCCACATCCAAAGTCCATGCTTCAG
Seq C2 exon
GCAACAGCTGAAGCTAATAATCTTGCTGCAGTAGCAGGAGCAAGAGAGATCTATTGCAAAAGTATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(9.6=60.5),PF028419=GBP_C=PU(10.7=32.6)
A:
PF028419=GBP_C=FE(13.7=100)
C2:
PF028419=GBP_C=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTTCCATTGCTCCTTGC
R:
CTCTCTTGCTCCTGCTACTGC
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development