GgaEX1009726 @ galGal4
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15777293-15780433:-
Coord C1 exon
chr3:15780306-15780433
Coord A exon
chr3:15778516-15778572
Coord C2 exon
chr3:15777293-15777364
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCTTTTATTTTTGATTCTAGGCT
3' ss Score
9.08
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATATAGATGAGGATTTTAAGAAAGAGCTGCGGAATTTGGTACCATTACTGCTTGCCCCTGAAAACTTGGTAGAAAAAGAGATTAGTGGATCCAAGGTGACCTGTAGAGATCTTGTAGAATACTTCAAG
Seq A exon
GCTTACATTAAAATCTATCAAGGAGAGGAGCTACCTCATCCAAAGTCTATGCTGCAG
Seq C2 exon
GCAACAGCTGAGGCAAACAATCTTGCTGCTGTGGCAGGAGCAAAAGACTTGTACAGTAAAGGCATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515-'30-22,'30-19,31-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(9.6=60.5),PF028419=GBP_C=PU(10.9=32.6)
A:
PF028419=GBP_C=FE(14.0=100)
C2:
PF028419=GBP_C=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCATTACTGCTTGCCCC
R:
AGTCTTTTGCTCCTGCCACAG
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]