RnoEX0012775 @ rn6
Exon Skipping
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2602958-2605598:+
Coord C1 exon
chr6:2602958-2603085
Coord A exon
chr6:2604640-2604696
Coord C2 exon
chr6:2605527-2605598
Length
57 bp
Sequences
Splice sites
3' ss Seq
CGAATCTTCTGTCTTTTTAGGCA
3' ss Score
9.38
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATTGATGAAGACTTTAAACGGGAGCTTCGGAATCTGGTTCCATTGCTGCTTGCTCCTGAGAATCTCGTTGAGAAAGAGATAAGTGGATCTAAAGTCACTTGTAGAGATCTTGTAGAGTATTTTAAG
Seq A exon
GCATACATTAAAATATATCAAGGAGAGGAACTACCACATCCAAAATCTATGCTTCAG
Seq C2 exon
GCAACAGCTGAGGCTAATAACCTGGCAGCAGTAGCGGGAGCAAGGGATGCCTACTGTAGAAGTATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523-'18-14,'18-13,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(9.6=60.5),PF028419=GBP_C=PU(10.7=32.6)
A:
PF028419=GBP_C=FE(13.7=100)
C2:
PF028419=GBP_C=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTTCGGAATCTGGTTC
R:
CGCTACTGCTGCCAGGTTATT
Band lengths:
143-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]