DreEX0015571 @ danRer10
Exon Skipping
Gene
ENSDARG00000057719 | atl2
Description
atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
Coordinates
chr13:7953914-7956195:-
Coord C1 exon
chr13:7956068-7956195
Coord A exon
chr13:7955132-7955188
Coord C2 exon
chr13:7953914-7953985
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATTTATTCCTTTTTTTGTAGGCA
3' ss Score
8.46
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGATTGATGATGAGTTCAAGAGGGAGCTGCAGAATCTAGTTCCTTTACTGCTGGCACCAGAGAACTTGGTAGAGAAAGAAATCGGTGGAGCTAAAGTCACATGCAGAGATCTGGTGGAGTACTTCAAG
Seq A exon
GCATATATCAAAATCTACCAAGGGGAGGAGCTTCCACATCCTAAATCCATGTTGCAG
Seq C2 exon
GCAACTGCTGAAGCGAACAATCTGACAGCTGTCGCTGGAGCAAAAGACACTTATAACAGAACCATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057719-'12-11,'12-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(9.6=60.5),PF028419=GBP_C=PU(10.1=32.6)
A:
PF028419=GBP_C=FE(13.0=100)
C2:
PF028419=GBP_C=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTACTGCTGGCACCAGAG
R:
TGTCTTTTGCTCCAGCGACAG
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]