HsaEX0006690 @ hg19
Exon Skipping
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:24047]
Coordinates
chr2:38526398-38536648:-
Coord C1 exon
chr2:38536521-38536648
Coord A exon
chr2:38527414-38527470
Coord C2 exon
chr2:38526398-38526469
Length
57 bp
Sequences
Splice sites
3' ss Seq
CAAATCTTCTCCCTTTTTAGGCT
3' ss Score
10.51
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
ATATTGATGAAGACTTTAAACGAGAGCTTCGAAATCTGGTTCCATTGCTGCTTGCCCCTGAAAATTTGGTAGAAAAAGAGATAAGTGGATCTAAAGTCACTTGTAGAGATCTTGTAGAATATTTTAAG
Seq A exon
GCTTACATCAAAATCTATCAAGGAGAAGAACTTCCACATCCAAAGTCCATGCTTCAG
Seq C2 exon
GCAACAGCTGAAGCTAATAATCTTGCTGCAGTAGCAGGAGCAAGAGATACCTATTGTAAAAGTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(15.3=60.5),PF028419=GBP_C=PU(10.7=32.6)
A:
PF028419=GBP_C=FE(13.7=100)
C2:
PF028419=GBP_C=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCTTGCCCCTGAAAAT
R:
ATCTCTTGCTCCTGCTACTGC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)