MmuEX6079539 @ mm9
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:80253174-80255603:-
Coord C1 exon
chr17:80255476-80255603
Coord A exon
chr17:80253894-80253950
Coord C2 exon
chr17:80253174-80253245
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGAATCTTGTGTCTTTTTAGGCA
3' ss Score
10.38
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATCGATGAAGACTTTAAACGGGAGCTTCGAAATCTGGTTCCATTGCTGCTTGCTCCTGAAAATCTTGTTGAGAAAGAGATAAGTGGATCGAAAGTCACTTGTAGAGATCTTGTAGAGTATTTTAAG
Seq A exon
GCATACATTAAAATATATCAAGGAGAGGAACTACCACACCCAAAGTCTATGCTTCAG
Seq C2 exon
GCAACAGCTGAGGCTAATAACCTGGCAGCAGTAGCAGGAGCAAGAGATGTCTATTGTAAAAGTATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(15.3=60.5),PF028419=GBP_C=PU(10.7=32.6)
A:
PF028419=GBP_C=FE(13.7=100)
C2:
PF028419=GBP_C=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGCTGCTTGCTCCTGAA
R:
TCTCTTGCTCCTGCTACTGCT
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: