MmuEX6079539 @ mm10
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:79853834-79856263:-
Coord C1 exon
chr17:79856136-79856263
Coord A exon
chr17:79854554-79854610
Coord C2 exon
chr17:79853834-79853905
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGAATCTTGTGTCTTTTTAGGCA
3' ss Score
10.38
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATCGATGAAGACTTTAAACGGGAGCTTCGAAATCTGGTTCCATTGCTGCTTGCTCCTGAAAATCTTGTTGAGAAAGAGATAAGTGGATCGAAAGTCACTTGTAGAGATCTTGTAGAGTATTTTAAG
Seq A exon
GCATACATTAAAATATATCAAGGAGAGGAACTACCACACCCAAAGTCTATGCTTCAG
Seq C2 exon
GCAACAGCTGAGGCTAATAACCTGGCAGCAGTAGCAGGAGCAAGAGATGTCTATTGTAAAAGTATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811-'19-16,'19-15,20-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.021
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(15.3=60.5),PF028419=GBP_C=PU(10.7=32.6)
A:
PF028419=GBP_C=FE(13.7=100)
C2:
PF028419=GBP_C=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGCTGCTTGCTCCTGAA
R:
TCTCTTGCTCCTGCTACTGCT
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types