BtaEX0005370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015789 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr3:14230728-14234507:-
Coord C1 exon
chr3:14234214-14234507
Coord A exon
chr3:14231933-14232166
Coord C2 exon
chr3:14230728-14231375
Length
234 bp
Sequences
Splice sites
3' ss Seq
GCACTTTCCTTCTGCCACAGACT
3' ss Score
8.32
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAGAGCTGTTCCTGGGTGCCCCTCCAGACAAGCTGACCTTGGAGGAGGCGCGGACATACTGCCAGGAGCGGGGTGCTAAGATTGCAACCACCGGCCAGCTGTATGCAGCCTGGGATGGTGGCCTGGACCGCTGCAGCCCTGGCTGGCTGGCTGATGGCAGTGTGCGCTACCCCATCGTCACCCCCAGCCAGCGCTGTGGTGGGGGCCTCCCTGGTGTCAAGACTCTCTTCCTCTTCCCCAACCAGACTGGCTTCCCCAACAAGCACAGCCGCTTCAACGTCTACTGCTTCCGAG
Seq A exon
ACTCTGCCCAGCCTTCTGCCATCCCTGAGGCAGCCAACCCAGCCTCTGACCTGGCCTCTGATGCACTGGAAGCCATTGTCACAGTGACTGAGACCCTGGAGGAACTGAAGCTGCCCCAGGAAGCTGTGGAAAGCGAGTCCCGAGGAGCCATCTACTCCATCCCCATTATAGAGGATGGAGGTGGTGGGAGCTCCACTCCAGAAGACCCAGCAGAGGCCCCTAGAACCCTCCTAG
Seq C2 exon
AATTCGAAACCCAATCCATTGTGCCTCCATTGGGGTCCTCAGAAGAGGAAGGCAAGGTGTTGGAGCAAGAAGAGAAATACAGGGGTGAAGAAGAGAAAGAAGAGGAAGAAGAAGAGGAGGAGGTGGAGGATGAGGCCCTGTGGGCCTGGCCCAGTGAGCTCAGCAGCCTGGACCCAGAGGCCCCTCTCCCCACTGAGCCCGTTCCAGAGGAGTCACTCACCCAGGCATCGCCTCCAGTGAGGGCTGCCCTCCAGCCTGGTGTATCACCACCACCCTATGATGAGCCAGAGGCTCCCAGGCCTCCAAGGGTCCTTGGACCACCCACCAAGACCCTGCCCACTCCTAGGGAGGGGAACCTGGCATCCCCCCCACCTTCCACTCTGGTTGGGGCAAGAGAGATAGAGGAGGAGACTGGGGGTCCTGAGCTCTCTGGGGCCCCTCGAGGAGAGAGTGAGGAGACAGGAAGCTCCGAGGATGCCCCTTCCCTGCTTCCAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015789-'8-15,'8-14,11-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.696 C2=0.982
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCTGGTGTCAAGACTCT
R:
TGAGTGACTCCTCTGGAACGG
Band lengths:
308-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development