RnoEX0014309 @ rn6
Exon Skipping
Gene
ENSRNOG00000018798 | Bcan
Description
brevican [Source:RGD Symbol;Acc:2194]
Coordinates
chr2:187365250-187367995:-
Coord C1 exon
chr2:187367702-187367995
Coord A exon
chr2:187366286-187366507
Coord C2 exon
chr2:187365250-187365837
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTCCTCTTGCCATAGACT
3' ss Score
9.59
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAGAACTGTTCCTAGGTGCCCCTCCCGGCAAGCTGACGTGGGAGGAGGCTCGGGACTACTGTCTGGAACGCGGTGCTCAGATCGCTAGCACGGGCCAGCTATACGCGGCATGGAATGGCGGCTTGGACAGATGTAGCCCTGGCTGGCTGGCTGATGGCAGTGTGCGGTACCCCATCATCACGCCCAGCCAACGCTGTGGGGGAGGCCTGCCAGGAGTCAAGACCCTCTTCCTCTTTCCCAACCAGACTGGCTTCCCCAGCAAGCAGAACCGCTTCAATGTCTACTGCTTCCGAG
Seq A exon
ACTCTGCCCATCCCTCTGCCTTCTCTGAGGCCTCCAGCCCAGCCTCTGATGGACTAGAGGCCATTGTCACAGTGACAGAGAAGCTGGAGGAACTGCAGTTGCCTCAGGAAGCTGTGGAGAGCGAGTCTCGTGGGGCGATCTACTCCATCCCCATCACAGAAGATGGGGGAGGAGGAAGCTCTACCCCAGAAGACCCAGCAGAGGCCCCCAGGACTCCTCTAG
Seq C2 exon
AATCAGAAACCCAATCCGTTGCACCACCTACCGGGTCCTCAGAAGAGGAAGGCGAAGCCCTGGAGGAAGAAGAAAGATTCAAAGACACAGAGACTCCGAAGGAAGAGAAGGAGCAGGAGAACCTGTGGGTGTGGCCCACGGAGCTCAGCAGCCCTCTCCCTACTGGCTTGGAAACAGAGCACTCACTCTCCCAGGTGTCCCCACCAGCCCAGGCAGTTCTACAGCTGGGTGCATCACCTTCTCCCAGGCCTCCAAGGGTCCATGGACCGCCTGCAGAGACTTTGCAACCCCCAAGGGAGGGAAGCCTCACATCTACTCCAGATGGGGCAAGAGAAGTAGCGGGGGAAACTGGGAGCCCTGAGCTCTCTGGGGTTCCTCGAGAAAGCGAGGAGGCAGGAAGCTCCAGCTTGGAGGATGGCCCTTCCCTCCTTCCAGCGACATGGGCCCCTGTGGGTACCAGGGAGCTGGAGACCCCCTCAGAAGAGAAGTCTGGAAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018798-'13-26,'13-21,16-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.865 C2=0.975
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGACTACTGTCTGGAACG
R:
CTCTTCTGAGGACCCGGTAGG
Band lengths:
292-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]