GgaEX0028208 @ galGal3
Exon Skipping
Gene
ENSGALG00000013237 | BCAN
Description
NA
Coordinates
chr25:887709-890039:+
Coord C1 exon
chr25:887709-888002
Coord A exon
chr25:888940-889368
Coord C2 exon
chr25:889857-890039
Length
429 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTTTCTGCCCACAGAAG
3' ss Score
10.44
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGGAAATATTTTTGGAGACAGCCCCGGACAAGTTTACCCTGGAGGAGGCGGCGGCGCGGTGCCGGGCGCAGGGTGCGGTGCTGGCGAGCACGGGGCAGCTGTATGCAGCCTGGAGTGCAGGGTTGGATGCCTGCAACCCGGGCTGGCTGGCTGATGGCAGCGTCCGCTATCCCATCGTCACCCCGAGGGAGCGCTGTGGAGGAGCCCTGCCGGGTGTCAAAACCATCTTCCAGTTTCGCAACCAGACGGGATTCCCCGATGCCCAGAGCAGATACGATGCGTACTGCTACCGAG
Seq A exon
AAGGGACAAACTCTTTCCCTGAGGCTGCAGGAAAATATCAAGCCAGAGAGCCCGAGGGCCTCCAGGAGATTGTTACAGTGGCAGAAAAGCTGGAGGAGCTGCAGCTGCCCAAAGCGCAAGTGGAGATTGAGTCGCGAGGGGCTATATACGCCGTCCCTTTCTTTAAGGACGTGGCTGATGCTGAGCTGGAAAAGCCAAGCCTGTCCCCCGAAGACACCCGGCACCCCCCAGTAGATGCCTCCTCGTCCTCAGCACGAGGACATCACCCATCCTCAGCCGCCCCTTTCCCCACAGCCCCAGCCGTCCCCAAGGCAGGCGTCCCGCATAGCTGTGCTGCACAACCAGGCAGCCCATCCCCTGCAGACCAGGACGGGGCGACAGGGAAAGGTGGAAGGTGCGCAGAGGCCAGGCAAGAGCCATCCCGCACGG
Seq C2 exon
AGGATGGAGCAGCGCTGGAGTGGCCCCTGGGCTCTGTGCTGGGTGAGGACTTCGGGAACACAGCAGCAGAGAGTCCGGGCAGAGGGCAAGAGCCTGGACAGCCCATGAAGCCGAACGTGCAGACACTTTTGGTGGGCACAGAAGGACCCAGTGACGCTCTGTCCCCAGCGGTGGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013237_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.351 C2=NA
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCCCGGACAAGTTTAC
R:
GACTCTCTGCTGCTGTGTTCC
Band lengths:
353-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]