MmuEX6071874 @ mm10
Exon Skipping
Gene
ENSMUSG00000004892 | Bcan
Description
brevican [Source:MGI Symbol;Acc:MGI:1096385]
Coordinates
chr3:87993055-87995703:-
Coord C1 exon
chr3:87995410-87995703
Coord A exon
chr3:87994112-87994333
Coord C2 exon
chr3:87993055-87993642
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTCCTCTTGCCACAGACT
3' ss Score
9.71
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAGAACTGTTCCTAGGCGCCCCTCCCAGCAAGCTGACATGGGAGGAGGCTCGGGACTACTGTCTGGAACGTGGTGCACAGATCGCTAGCACAGGCCAGCTGTACGCAGCCTGGAATGGTGGCCTGGACAGATGTAGCCCTGGCTGGCTGGCTGATGGCAGCGTGCGCTATCCCATCATCACACCCAGCCAACGCTGTGGGGGCGGCCTGCCAGGAGTCAAGACCCTCTTCCTCTTTCCCAACCAGACTGGCTTCCCCAGCAAGCAGAACCGCTTCAATGTCTACTGCTTCCGAG
Seq A exon
ACTCTGCCCATCCCTCTGCTTCCTCTGAGGCCTCTAGCCCAGCCTCAGATGGACTTGAGGCCATTGTCACAGTGACAGAAAAGCTGGAGGAACTGCAGCTGCCTCAGGAAGCGATGGAGAGCGAGTCTCGTGGGGCCATCTACTCCATCCCCATCTCAGAAGATGGGGGAGGAGGAAGCTCCACCCCAGAAGACCCAGCAGAGGCCCCCAGGACTCCGCTAG
Seq C2 exon
AATCGGAAACCCAATCCATTGCACCACCTACCGAGTCCTCAGAAGAGGAAGGCGTAGCCCTGGAGGAAGAAGAAAGATTCAAAGACTTGGAGGCTCTGGAGGAAGAGAAGGAGCAGGAGGACCTGTGGGTGTGGCCCAGAGAGCTCAGCAGCCCTCTCCCTACTGGCTCAGAAACAGAGCATTCACTCTCCCAGGTGTCCCCACCAGCCCAGGCAGTTCTACAGCTGGGTGCCTCACCTTCTCCTGGGCCTCCAAGGGTCCGTGGACCGCCTGCAGAGACTTTGCTCCCCCCGAGGGAGGGAAGCCCCACATCTACTCCTGGTGGGGCAAGAGAAGTAGGGGGGGAAACTGGGAGCCCTGAGCTCTCTGGGGTTCCTCGAGAGAGCGAGGAGGCAGGGAGCTCCAGCTTGGAGGATGGCCCTTCCCTACTTCCAGCTACATGGGCCCCTGTGGGTCCCAGGGAGCTGGAGACCCCCTCAGAAGAGAAGTCTGGAAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004892-'13-20,'13-19,14-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.880 C2=0.980
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGTGGCCTGGACAGATG
R:
GGTCCTCCTGCTCCTTCTCTT
Band lengths:
305-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types