MmuEX6071874 @ mm9
Exon Skipping
Gene
ENSMUSG00000004892 | Bcan
Description
brevican [Source:MGI Symbol;Acc:MGI:1096385]
Coordinates
chr3:87796977-87799625:-
Coord C1 exon
chr3:87799332-87799625
Coord A exon
chr3:87798034-87798255
Coord C2 exon
chr3:87796977-87797564
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTCCTCTTGCCACAGACT
3' ss Score
9.71
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAGAACTGTTCCTAGGCGCCCCTCCCAGCAAGCTGACATGGGAGGAGGCTCGGGACTACTGTCTGGAACGTGGTGCACAGATCGCTAGCACAGGCCAGCTGTACGCAGCCTGGAATGGTGGCCTGGACAGATGTAGCCCTGGCTGGCTGGCTGATGGCAGCGTGCGCTATCCCATCATCACACCCAGCCAACGCTGTGGGGGCGGCCTGCCAGGAGTCAAGACCCTCTTCCTCTTTCCCAACCAGACTGGCTTCCCCAGCAAGCAGAACCGCTTCAATGTCTACTGCTTCCGAG
Seq A exon
ACTCTGCCCATCCCTCTGCTTCCTCTGAGGCCTCTAGCCCAGCCTCAGATGGACTTGAGGCCATTGTCACAGTGACAGAAAAGCTGGAGGAACTGCAGCTGCCTCAGGAAGCGATGGAGAGCGAGTCTCGTGGGGCCATCTACTCCATCCCCATCTCAGAAGATGGGGGAGGAGGAAGCTCCACCCCAGAAGACCCAGCAGAGGCCCCCAGGACTCCGCTAG
Seq C2 exon
AATCGGAAACCCAATCCATTGCACCACCTACCGAGTCCTCAGAAGAGGAAGGCGTAGCCCTGGAGGAAGAAGAAAGATTCAAAGACTTGGAGGCTCTGGAGGAAGAGAAGGAGCAGGAGGACCTGTGGGTGTGGCCCAGAGAGCTCAGCAGCCCTCTCCCTACTGGCTCAGAAACAGAGCATTCACTCTCCCAGGTGTCCCCACCAGCCCAGGCAGTTCTACAGCTGGGTGCCTCACCTTCTCCTGGGCCTCCAAGGGTCCGTGGACCGCCTGCAGAGACTTTGCTCCCCCCGAGGGAGGGAAGCCCCACATCTACTCCTGGTGGGGCAAGAGAAGTAGGGGGGGAAACTGGGAGCCCTGAGCTCTCTGGGGTTCCTCGAGAGAGCGAGGAGGCAGGGAGCTCCAGCTTGGAGGATGGCCCTTCCCTACTTCCAGCTACATGGGCCCCTGTGGGTCCCAGGGAGCTGGAGACCCCCTCAGAAGAGAAGTCTGGAAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004892-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.880 C2=0.980
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGTGGCCTGGACAGATG
R:
GGTCCTCCTGCTCCTTCTCTT
Band lengths:
305-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: