GgaEX0028208 @ galGal4
Exon Skipping
Gene
ENSGALG00000013237 | BCAN
Description
brevican [Source:HGNC Symbol;Acc:HGNC:23059]
Coordinates
chr25:500394-502724:+
Coord C1 exon
chr25:500394-500687
Coord A exon
chr25:501625-502053
Coord C2 exon
chr25:502542-502724
Length
429 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTTTCTGCCCACAGAAG
3' ss Score
10.44
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GGGAAATATTTTTGGAGACAGCCCCGGACAAGTTTACCCTGGAGGAGGCGGCGGCGCGGTGCCGGGCGCAGGGTGCGGTGCTGGCGAGCACGGGGCAGCTGTATGCAGCCTGGAGTGCAGGGTTGGATGCCTGCAACCCGGGCTGGCTGGCTGATGGCAGCGTCCGCTATCCCATCGTCACCCCGAGGGAGCGCTGTGGAGGAGCCCTGCCGGGTGTCAAAACCATCTTCCAGTTTCGCAACCAGACGGGATTCCCCGATGCCCAGAGCAGATACGATGCGTACTGCTACCGAG
Seq A exon
AAGGGACAAACTCTTTCCCTGAGGCTGCAGGAAAATATCAAGCCAGAGAGCCCGAGGGCCTCCAGGAGATTGTTACAGTGGCAGAAAAGCTGGAGGAGCTGCAGCTGCCCAAAGCGCAAGTGGAGATTGAGTCGCGAGGGGCTATATACGCCGTCCCTTTCTTTAAGGACGTGGCTGATGCTGAGCTGGAAAAGCCAAGCCTGTCCCCCGAAGACACCCGGCACCCCCCAGTAGATGCCTCCTCGTCCTCAGCACGAGGACATCACCCATCCTCAGCCGCCCCTTTCCCCACAGCCCCAGCCGTCCCCAAGGCAGGCGTCCCGCATAGCTGTGCTGCACAACCAGGCAGCCCATCCCCTGCAGACCAGGACGGGGCGACAGGGAAAGGTGGAAGGTGCGCAGAGGCCAGGCAAGAGCCATCCCGCACGG
Seq C2 exon
AGGATGGAGCAGCGCTGGAGTGGCCCCTGGGCTCTGTGCTGGGTGAGGACTTCGGGAACACAGCAGCAGAGAGTCCGGGCAGAGGGCAAGAGCCTGGACAGCCCATGAAGCCGAACGTGCAGACACTTTTGGTGGGCACAGAAGGACCCAGTGACGCTCTGTCCCCAGCGGTGGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013237_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.701 C2=1.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=WD(100=98.0)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000021615fB5392
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCCCGGACAAGTTTAC
R:
GACTCTCTGCTGCTGTGTTCC
Band lengths:
353-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]