BtaEX0006950 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103451592-103453622:-
Coord C1 exon
chr11:103453414-103453622
Coord A exon
chr11:103453088-103453190
Coord C2 exon
chr11:103451592-103451707
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCTCGTCTTGTCTCCGGCAGCTG
3' ss Score
9.71
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCGTAAAGCAGAGGAAGACCGGATCCGCAAGGAGGAGGAGAAGGCGCGGCGGGAGCTGATCAAGCAGGAGTACCTGCGGCGGAAGCAGCAGCAGATCCTGGAGGAGCAGGGCCTGGGCAAACCCAAGACCAGGCCCAGGAAGCCGCGGCCCAAGTCCGTCCACCGGGAGGAGCCAGGCAGCGACCTGGGACCTAAGAGCGCCTCCCCCC
Seq A exon
CTGATAACCTGAGCCGGGCCCAGTCGGGCTCCAGCCTGTCGTTGGCCTCCGCAGCGACCACAGAGCCCGAGAGCGTGCATTCGGGGGGCACGCCTTCGCAGCG
Seq C2 exon
AGTCGAGTCCCTGGAAGCCTTGCCCGTGCTGAGCCGCAACCCCAGCAGGAGCACCGACAGAGACTGGGAGACTGCCTCCGCCGCGTCCTCACTCGCCTCCGTGGCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAGGAGAAGGCGC
R:
CAGTCTCCCAGTCTCTGTCGG
Band lengths:
255-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development