RnoEX6015936 @ rn6
Exon Skipping
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3381445-3383085:-
Coord C1 exon
chr3:3382877-3383085
Coord A exon
chr3:3382506-3382608
Coord C2 exon
chr3:3381445-3381560
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTTGTTTCTGCAGCAG
3' ss Score
9.33
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCGTAAGGCCGAAGAGGACCGATTACGGAAGGAGGAGGAGAAGGCGAGGCGAGAGCTCATTAAACAGGAGTACTTGCGGAGGAAGCAGCAGCAAGCCTTGGAGGAGCAAGGGCTTGGCAAACCTAAATCAAAGCCTAAAAAGCCTCGGCCAAAGTCAGTTCACCGGGAGGAGTCTTGCAGCGACTCTGGCACCAAGTGCTCTTCTACCC
Seq A exon
CAGATAACTTGAGCCAGACTCACTCTGGCTCTAGCCTGTCCTTGGCATCTGCAGCAACGACAGAACCTGAAAGTGTTCACTCGGGGGGCACACCTTCTCACCG
Seq C2 exon
AGTTGAATCACTGGAAGCCTTACCTATCCTGAGTCGCAACCCCAGTCGGAGCACAGACCGAGACTGGGAGACTGCATCGGCAGCTTCCTCTTTGGCCTCTGTGGCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883-'26-26,'26-24,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGTACTTGCGGAGGAA
R:
CAGAGGCCAAAGAGGAAGCTG
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]