GgaEX1012718 @ galGal3
Exon Skipping
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8898950-8899812:+
Coord C1 exon
chr17:8898950-8899158
Coord A exon
chr17:8899243-8899345
Coord C2 exon
chr17:8899697-8899812
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTTCTTTTTTGTAGCTG
3' ss Score
9.86
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
TCGCAAAGCTGAGGAGGACAGAATACGCAAGGAAGAGGAGAAGGCTCGTAGAGAACTTATCAAGCAGGAATATCTAAGGAAAAAACAGCAGCAAATCTTGGAGGAGCAAGGGCTTGGAAAGCCCAAATCAAAGCCCAAGAAACCCAGGCCAAAGTCGGTCCATCGTGAGGAATCTTACAGTGATTCAGGGACAAAGTGTTCTTCTACTC
Seq A exon
CTGATAATTTGAGCAGTGCTCAGTCTGGTTCCAGTCTTTCTTTGGCCTCAGCAGCAACAACGGAACCTGAAAGTGTACACTCTGGTGGCACACCATCTCAGAG
Seq C2 exon
AGTTGAATCTATGGAGTCATTACCAATCCTGAGCAGAAATCCTAGCAGAAACACAGAAAGAGACTGGGAGAACGCTTCAACTGCATCTTCTATTGCTTCAGTGGCAGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(2.4=2.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGGAGAAGGCTCGTAGA
R:
TGAAGCGTTCTCCCAGTCTCT
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]